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Variation in Gene Expression in Neurofibromatosis Type 1 - Article


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Neurofibromatosis 2

BANF; Bilateral Acoustic Neurofibromatosis; Familial Acoustic Neuromas; Schwannoma, Acoustic, Bilateral 




Clinical Trial: Variation in Gene Expression in Neurofibromatosis Type 1

This study is currently recruiting patients.

Sponsored by: National Human Genome Research Institute (NHGRI)
Information provided by: Warren G Magnuson Clinical Center (CC)

Purpose

We hypothesize that normal germine variation in gene expression accounts, in part, for variation in the clinical severity and phenotype of the monogenic disorder neurofibromatosis type 1(NF1). The phenotype of NF1 is constituted by a variety of quantifiable features; we term these features "subphenotypes". Our main focus is on sub-phenotypes with published evidence of variation in expression from an inherited component. These include our primary sub-phenotype of spinal neurofibroma burden (quantified by MRI of spinal neurofibromas) and the secondary sub-phenotypes of dermal neurofibroma burden, head circumference, number of Lisch nodules, scoliosis, history of plexiform neurofibromas, and height. Other sub-phenotypes, as collected by a routine history and physical, will also be evaluated.

According to our hypothesis, the severity of a sub-phenotype will correlate with heritable differences in the germline expression of certain genes. As an example, consider a spectrum of individuals affected with the primary sub-phenotype of spinal neurofibroma burden. For most genes, there will be no relationship of expression level to the number of spinal neurofibromas. However, some genes will have a direct (or inverse, or other) correlation of their level of expression and the number of neurofibromas. Such genes would be considered as candidate modifier genes. The secondary sub-phenotypes will also be analyzed in a similar way. To limit false positives, candidate genes will then be tested for association and linkage (using the transmission/disequilibrium test, TDT, and affected sibling pairs, ASPs) with the appropriate sub-phenotype.

Recruitment will be focused on identifying individuals with a range of severity of the primary sub-phenotype, spinal neurofibroma burden. We will primarily recruit post-pubertal individuals who meet the 1988 NIH criteria for neurofibromatosis type 1 (NIH Consensus Development Conference 1988). We will exclude those with recognized segmental or mosaic NF1. The rate of cutaneous neurofibroma growth and number is known to vary widely; these tumors typically appear in adolescence. For this reason we will ascertain patients after puberty. We expect most individuals to be 18 years or older, but will also accept post-pubertal pediatric patients (and use a hand film to demonstrate bone age). Parents (whether affected or not) are critical when using family-based test of association (like theTDT) and test of linkage and will also be recruited.

To detect linkage, a minimum of 200 ASPs with spinal neurofibromas is needed. Test of association with the TDT require trios (mother, father, proband) that can be derived from ASP families. However, we will also recruit trios independent of ASP families. Thus, we set a recruitment goal of 1500 individuals (500 affected individuals, plus 1000 parent or additional sibs in about 400 families) to accommodate this requirement.

MedlinePlus consumer health information 

Study Type: Observational
Study Design: Natural History

Further Study Details: 

Expected Total Enrollment:  1500

Study start: May 9, 2005

We hypothesize that normal germine variation in gene expression accounts, in part, for variation in the clinical severity and phenotype of the monogenic disorder neurofibromatosis type 1(NF1). The phenotype of NF1 is constituted by a variety of quantifiable features; we term these features "subphenotypes". Our main focus is on sub-phenotypes with published evidence of variation in expression from an inherited component. These include our primary sub-phenotype of spinal neurofibroma burden (quantified by MRI of spinal neurofibromas) and the secondary sub-phenotypes of dermal neurofibroma burden, head circumference, number of Lisch nodules, scoliosis, history of plexiform neurofibromas, and height. Other sub-phenotypes, as collected by a routine history and physical, will also be evaluated. According to our hypothesis, the severity of a sub-phenotype will correlate with heritable differences in the germline expression of certain genes. As an example, consider a spectrum of individuals affected with the primary sub-phenotype of spinal neurofibroma burden. For most genes, there will be no relationship of expression level to the number of spinal neurofibromas. However, some genes will have a direct (or inverse, or other) correlation of their level of expression and the number of neurofibromas. Such genes would be considered as candidate modifier genes. The secondary sub-phenotypes will also be analyzed in a similar

way. To limit false positives, candidate genes will then be tested for association and linkage (using the transmission/disequilibrium test, TDT, and affected sibling pairs, ASPs) with the appropriate sub-phenotype.

Recruitment will be focused on identifying individuals with a range of severity of the primary sub-phenotype, spinal neurofibroma burden. We will primarily recruit post-pubertal individuals who meet the 1988 NIH criteria for neurofibromatosis type 1 (NIH Consensus Development Conference 1988). We will exclude those with recognized segmental or mosaic NF1. The rate of cutaneous neurofibroma growth and number is known to vary widely; these tumors typically appear in adolescence. For this reason we will ascertain patients after puberty. We expect most individuals to be 18 years or older, but will also accept post-pubertal pediatric patients (and use a hand film to demonstrate bone age). Parents (whether affected or not) are critical when using family-based test of association (like theTDT) and test of linkage and will also be recruited. To detect linkage, a minimum of 200 ASPs with spinal neurofibromas is needed. Test of association with the TDT require trios (mother, father, proband) that can be derived from ASP families. However, we will also recruit trios independent of ASP families. Thus, we set a recruitment goal of 1500 individuals (500 affected individuals, plus 1000 parent or additional sibs in about 400 families) to accommodate this requirement.

Eligibility

Genders Eligible for Study:  Both

Criteria

INCLUSION / EXCLUSION CRITERIA:
We will recruit post- pubertal male and female individuals who meet the widely accepted 1988 NIH criteria for neurofibromatosis type 1 (NIH Consensus Development Coference 1988).
At the PI's discretion, medical records will be reviewed prior to enrollment to exclude individuals with probable segmental or mosaic NF1.
We may at our discretion occasionally recruit individuals with unique or under-recognized features of NF1 ("Group C").
Practically, we expect that most individuals recruited to the study will be 18 years or older, however, we will include post-pubertal pediatric patients (e.g. generally 16 years and older).
For individuals less than 18 years of age, an AP film of the hand for bone age will be required.
Parents and siblings (especially if affected) will be recruited.

Location and Contact Information

Please refer to this study by ClinicalTrials.gov identifier  NCT00111384


Maryland
      National Human Genome Research Institute (NHGRI), 9000 Rockville Pike,  Bethesda,  Maryland,  20892,  United States; Recruiting
Patient Recruitment and Public Liaison Office  1-800-411-1222    prpl@mail.cc.nih.gov 
TTY  1-866-411-1010 

More Information

Detailed Web Page

Publications

Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS, Cheung VG. Genetic analysis of genome-wide variation in human gene expression. Nature. 2004 Aug 12;430(7001):743-7. Epub 2004 Jul 21.

Easton DF, Ponder MA, Huson SM, Ponder BA. An analysis of variation in expression of neurofibromatosis (NF) type 1 (NF1): evidence for modifying genes. Am J Hum Genet. 1993 Aug;53(2):305-13.

Carey JC, Viskochil DH. Neurofibromatosis type 1: A model condition for the study of the molecular basis of variable expressivity in human disorders. Am J Med Genet. 1999 Mar 26;89(1):7-13. Review.

Study ID Numbers:  050152; 05-HG-0152
Record last reviewed:  May 5, 2005
Last Updated:  May 20, 2005
Record first received:  May 19, 2005
ClinicalTrials.gov Identifier:  NCT00111384
Health Authority: United States: Federal Government
ClinicalTrials.gov processed this record on 2005-05-24

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November 24, 2009



Page Updated: October 15, 2009
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